RMD: a rice mutant database for functional analysis of the rice genome

نویسندگان

  • Jianwei Zhang
  • Caishun Li
  • Changyin Wu
  • Lizhong Xiong
  • Guoxing Chen
  • Qifa Zhang
  • Shiping Wang
چکیده

Rice Mutant Database (RMD, http://rmd.ncpgr.cn) is an archive for collecting, managing and searching information of the T-DNA insertion mutants generated by an enhancer trap system. We have generated approximately 129 000 rice mutant (enhancer trap) lines that are now being gathered in the database. Information collected in RMD includes mutant phenotypes, reporter-gene expression patterns, flanking sequences of T-DNA insertional sites, seed availability and others, and can be searched by respective ID, keyword, nucleotide sequence or protein sequence on the website. This database is both a mutant collection for identifying novel genes and regulatory elements and a pattern line collection for ectopic expression of target gene in specific tissue or at specific growth stage.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Study of Genetical Correlation and Diversity of Morphological Traits Induced in Rice (Oryza sativa L.) Mutant Population of Hashemi Cultivar

Mutagenesis has been one of the important sources of genetic diversity and Plant mutants can be important bio-resources for crop breeding and functional genomics studies. Breeding conventional methods for generating of genetic variability are of low efficiency. We showed that treatment of seeds of rice(Hashemi cultivar) with 0.8% EMS for 8 h caused visible phenotypic variations on M2 rice mutan...

متن کامل

Isolation and molecular characterization of the RecQsim gene in Arabidopsis, rice (Oryza sativa) and rape (Brassica napus)

In any organism that reproduces sexually, DNA Recombination plays vital roles in the generation of allelic diversity as well as in preservation of genome fidelity. Genome fidelity is particularly important in plants because mutations occurring during the development of flowering plants are heritable and can be passed onto the next generation. One of the gene families that play crucial roles in ...

متن کامل

Determination of QTLs Controlling Agronomical Traits in Rice Population Derived from Cross of Tarom Landrace and Tarom Mutant

In order to identify QTLs controlling agronomically traits, landrace Tarom and rice Tarom mutant were crossed. SSR, ISSR, iPBS and IRAP markers were amplified in 250 F2 individuals to prepare the linkage map. Number of tillers, 100 grain weight, number of filled grains, number of unfilled grains, plant height, panicle length, number of branches, stem diameter, grain length, grain width, grain s...

متن کامل

An online database for genome information of agricultural plants

UNLABELLED The integration-based genome database provides useful information through a user-friendly web interface that allows analysis of comparative genome for agricultural plants. We have concentrated on the functional bioinformatics of major agricultural resources, such as rice, Chinese cabbage, rice mutant lines, and microorganisms. The major functions are focused on functional genome anal...

متن کامل

Evaluation of salinity response through the antioxidant defense system and osmolyte accumulation in a mutant rice

In order to assess the responses of Hashemi rice genotype and its advanced mutant line under salinity stress of 100 mM Sodium chloride (NaCl) for three and six days the shoot samples were taken for biochemical analysis. This experiment was performed in split plot based on randomized complete block design with three replications. The main factor was factorial combination of saline treatmen...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Nucleic Acids Research

دوره 34  شماره 

صفحات  -

تاریخ انتشار 2006